While the marketing for Captain Marvel indicated the Skrulls were the movie's bad guys, it was the Kree's leader, the Supreme Intelligence, who was the true villain, aiming to wipe the race of shape-shifting aliens out. A deleted scene from the movie adds an even more sinister aspect to the Supreme Intelligence while showing a more a pitiful side to Yon-Rogg (Jude Law).
The scene begins with Yon-Rogg approaching the Supreme Intelligence, which assumes his form and starts to berate him for his failure. The Supreme Intelligence then accuses him of having feelings for Carol, which he refutes. The Supreme Intelligence continues to chastise Yon-Rogg, who lies about his failures and eventually breaks down. He then asks for permission to kill Carol, but the Supreme Intelligence instead commands him to retrieve her and the Tesseract.
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As the Supreme Intelligence takes the form of the person one admires most, the clip highlights Yon-Rogg's narcissism, while also highlighting his weakness. The scene also shows a more abusive side to the Supreme Intelligence, with it talking down to Yon-Rogg and instilling fear in him. This definitely adds a much more eerie element to the Supreme Intelligence, showing another, more disturbing way it leads the Kree.
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Directed by Anna Boden and Ryan Fleck, Captain Marvel stars Brie Larson as Carol Danvers, Samuel L. Jackson as Nick Fury, Jude Law as Yon-Rogg, Clark Gregg as Phil Coulson, Lee Pace as Ronan the Accuser, Djimon Hounsou as Korath the Pursuer, Gemma Chan as Minn-Erva, Ben Mendelsohn as Talos, Lashana Lynch as Maria Rambeau, Algenis Perez Soto as Att-Lass, McKenna Grace as a young Carol Danvers and Annette Bening as the Supreme Intelligence. The film is now available on Digital HD, Blu-ray and 4K UHD.